PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0365
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 166aa    MW: 18667 Da    PI: 8.4042
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0365genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY205.71.8e-6381586170
        YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103
                  ++eq+Cy+ CnfCn +lavsvP +slf  vtvrCGhCt+l svn+a a q l+ ++           +    +++++++ + ++++ +t+ s+   s+
  Gh_D07G0365   8 APEQLCYIPCNFCNIVLAVSVPCSSLFDSVTVRCGHCTNLWSVNMAAAFQSLSWQDA----------QGASYATQDYRTDQGSSSKCNTKFSMRAPSK 95 
                  79**********************************************999999996..........3344444444444445555555555555566 PP

        YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  n +ee      v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Gh_D07G0365  96 NATEERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 158
                  6666655....89****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-718158IPR006780YABBY protein
SuperFamilySSF470953.27E-8101151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.1E-4106152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSTCTNLAPE QLCYIPCNFC NIVLAVSVPC SSLFDSVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDAQGASYA TQDYRTDQGS SSKCNTKFSM RAPSKNATEE RVVNRPPEKR QRVPSAYNQF  120
IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML ENQKSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458485.11e-121PREDICTED: axial regulator YABBY 5-like isoform X2
SwissprotQ8GW463e-89YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0D2PHL11e-121A0A0D2PHL1_G
STRINGVIT_11s0016g05590.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-90YABBY family protein